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  2. PhD position: pluripotent stem cell-derived gut-brain axis on a microfluidic chip.

PhD position: pluripotent stem cell-derived gut-brain axis on a microfluidic chip.

Are you fascinated by how it is possible, while being separated from each other by a distance of a mere meter, that the gut microbiota interacts with the brain? Are you keen to explore the potential of stem cell biology to address this question? Do you share our excitement to delve deeper into understanding the very fundamental molecular mechanisms by which microbiome-brain interactions, not leaving a single stone unturned? Do you see yourself as a highly intrinsically motivated, pro-active and independent individual, not scared of getting your hands on new technologies, a team player, open-minded to learning?

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Key takeaways

  • Hours 38 - 40 hr.
  • Salary indication € 2,541 - € 3,247
  • Deadline 1 Aug 2022

The project
Brain disorders present a global debilitating burden to society urgently calling for in-depth molecular understanding of their pathological processes to propel the development of effective therapeutic targeting strategies forward. While many brain-localized aspects are known that regulate brain function, interestingly, a feature located nearly a meter away from the brain critically drives brain activity and cognition. This feature comprises the intestinal microbiota, or microbiome, which is considered to interact with the brain via the intestinal microbiome-gut-brain axis. Perturbations in the richness and diversity of the microbiome are a common feature in many brain-related disorders, including neurodegeneration, brain tumors, multiple sclerosis, autism spectrum disorders and schizophrenia. Nevertheless, the molecules, cell types and signaling pathways involved in this multi-tissue process remain enigmatic. Studies into this topic remain sparse as a result of multi-organ complexity and challenges to accurately recapitulate this complexity by means of current model systems of the human physiological microbiome-gut-brain axis. This project aims to provide fundamental mechanistic insights into how long distance interaction aids the communication between the microbiome and the brain health and disease by exploiting the differentiation potential of induced pluripotent stem cells into organoids. This project will generate an integrated microbiome-gut-brain axis from polycultured microbiome and stem cell-derived intestine, vagus nerve and brain connection that recapitulates key aspects of human physiology.

Your role
You will be generating human induced pluripotent stem cell-derived organoids of the intestine and vagus nerve along existing protocols. You will develop a differentiation procedure to create a brain stem organoid from pluripotent stem cells. Following their generation, you will validate the identity, stage of maturation, and functional activity of the organoids using biomarker (protein and mRNA) expression, imaging, epithelial barrier integrity and electrophysiological read-outs. Using CRISPR-Cas9-mediated gene editing you will modulate the genetic make-up of pluripotent stem cells to express potential features of interest to microbiome-gut-brain axis communication. Under the supervision of a highly skilled post-doctoral scientist and in collaboration with other groups at the University of Twente you will be creating microfluidic devices for organoid culture. You will generate bacterial cultures and use live cell stains to visualize their co-culture with intestinal organoids using microscopy. You will assess co-culture induced changes in specific marker expression using western blot, ELISA and confocal imaging.

Your profile

We are seeking for a highly driven individual, keen to push the boundaries of current technological and biological state-of-the-art looking to pursue an academic career as a PhD

  • You have a MSc degree in cell biology, biochemistry or neurobiology
  • You have a hands-on in-depth expertise in (stem) cell biology and biochemistry
  • You have affinity with neurobiological systems
  • You preferably have experience using CRISPR-Cas9 to edict cell lines and worked with differentiation protocols to create organoid cultures before.
  • You are an eloquent and transparent communicator, keen to learn from others and share your insights with the team
  • Proficiency in English is required, both spoken and written
  • You need to provide IELTS test results (minimum score 6.5) or TOEF iBT (minimum score 90)
  • You are not shying away from leaving the beaten track to push our research forward, view challenges as exciting opportunities, and are an out-of -box thinker
  • As some microfluidic chip fabrication will be required in this project, you are interested in learning how to create these devices.
  • The latter is not necessary for native speakers of English or whose MSc program was in English.

Our offer

  • Fulltime position for four years
  • The university offers a dynamic ecosystem with enthusiastic colleagues in a stimulating scientific environment.
  • The PhD salary is € 2.541,- in the first year and increases to € 3.247,- in the fourth year.
  • A holiday allowance of 8% of the gross annual salary and a year-end bonus of 8.3%.
  • The number of holiday hours for full-time employment is 232 hours per calendar year.
  • A personal development program within the Twente Graduate School.

Information and application

Please submit your application before August the first Using the “Apply now”  button and include:

Additional information on this position can be acquired from prof. dr. Kerensa Broersen, phone: +31 611249675, email: k.broersen@utwente.nl.

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About the organization

The Faculty of Science & Technology (Technische Natuurwetenschappen, TNW) engages some 700 staff members and 2000 students in education and research on the cutting edge of chemical technology, applied physics and biomedical technology. Our fields of application include sustainable energy, process technology and materials science, nanotechnology and technical medicine. As part of a people-first tech university that aims to shape society, individuals and connections, our faculty works together intensively with industrial partners and researchers in the Netherlands and abroad, and conducts extensive research for external commissioning parties and funders. Our research has a high profile both in the Netherlands and internationally and is strengthened by the many young researchers working on innovative projects with as doctoral candidates and post-docs. It has been accommodated in three multidisciplinary UT research institutes: Mesa+ Institute, TechMed Centre and Digital Society Institute.

About the TNW Faculty

Curious about what the Faculty of Science and Technology (TNW) stands for? Check out the Science and Technology website for more information.

job that matters

Create new opportunities for yourself, your colleagues and our society. Scientist or teacher, administrator or facilitator, thinker or doer, energetic leader or silent support – your work at the University of Twente matters. And you too!

How to apply

Step 1

Apply.
When you see a vacancy that appeals to you, you can apply online. We ask you to upload a CV and motivation letter and/or list of publications. You will receive a confirmation of receipt by e-mail.

Apply now

Step 2

Selection.
The selection committee will review your application and you will receive a response within 2 weeks after the vacancy has been closed.

Step 3

1st interview.
The 1st (online or in person) meeting serves as an introduction where we introduce ourselves to you and you to us. You may be asked to give a short presentation. This will be further explained in the invitation.

Step 4

2nd interview.
In the second interview, we will further discuss the job content, your skills and your talents.

Step 5

The offer.
If the conversations are positive, you will be made a suitable offer.

Want to know more?

Broersen, K. (Kerensa)

Broersen, K. (Kerensa)
Associate Professor

Broersen, K. (Kerensa)
Associate Professor

Do you have questions about this vacancy? Then you can contact Kerensa for all substantive questions about this position and the application procedure. For general questions about working for the UT, please refer to the chatbot.

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